PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597574.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20142.4 Da    PI: 9.9923
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.42.8e-111554443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    ++k+  +v +s+ ++ + K A  LS+LC++++a+iifs t
  XP_009597574.1 15 KDKRAEKVALSNKQKALSKRAMDLSILCGIDIAIIIFSIT 54
                    789999*******************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0012463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.778464IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-6626IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-15677IPR002100Transcription factor, MADS-box
PfamPF003198.8E-101560IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-62641IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-64162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTSPMKNKSE KKLLKDKRAE KVALSNKQKA LSKRAMDLSI LCGIDIAIII FSITAEPFMF  60
GNPNVESVVE RFSQAKQPFY RMLSRKTTHE KAGCGDENDT MKKKKKKAIN EKEKGESTLE  120
IFKPTNLERL EKLKQEIDEL ERDLTEKIEE VRSKIGVTDP KFVPEMNATM SSAMPSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009597574.11e-126PREDICTED: MADS-box transcription factor 23-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258